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Alexov, Emil
One or more keywords matched the following items that are connected to Alexov, Emil
Item TypeName
Concept Protein Binding
Concept Protein Subunits
Concept Protein Transport
Concept Protein Folding
Concept Protein Processing, Post-Translational
Concept Tumor Suppressor Protein p53
Concept Protein Interaction Mapping
Concept Methyl-CpG-Binding Protein 2
Concept Protein Interaction Domains and Motifs
Concept Protein Denaturation
Concept Protein Structure, Secondary
Concept Ubiquitin-Protein Ligases
Concept Protein Structure, Tertiary
Concept Protein Multimerization
Concept Protein Stability
Concept Protein Structure, Quaternary
Concept Structural Homology, Protein
Concept Calcium-Calmodulin-Dependent Protein Kinase Type 2
Concept Protein Isoforms
Concept Protein Conformation
Concept Databases, Protein
Concept Sequence Analysis, Protein
Concept Light-Harvesting Protein Complexes
Academic Article Predicting folding free energy changes upon single point mutations.
Academic Article Selective absorption of radio frequency energy due to collective motion of charged domains: case of lysozyme crystal.
Academic Article Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties.
Academic Article Calculated protein and proton motions coupled to electron transfer: electron transfer from QA- to QB in bacterial photosynthetic reaction centers.
Academic Article A pragmatic approach to structure based calculation of coupled proton and electron transfer in proteins.
Academic Article Role of the protein side-chain fluctuations on the strength of pair-wise electrostatic interactions: comparing experimental with computed pK(a)s.
Academic Article Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling.
Academic Article On the role of structural information in remote homology detection and sequence alignment: new methods using hybrid sequence profiles.
Academic Article Numerical calculations of the pH of maximal protein stability. The effect of the sequence composition and three-dimensional structure.
Academic Article Experimental and numerical study of the poplar plastocyanin isoforms using Tyr as a probe for electrostatic similarity and dissimilarity.
Academic Article Calculating proton uptake/release and binding free energy taking into account ionization and conformation changes induced by protein-inhibitor association: application to plasmepsin, cathepsin D and endothiapepsin-pepstatin complexes.
Academic Article Comparative study of the stability of poplar plastocyanin isoforms.
Academic Article Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of His41 to the pH-dependent stability of the N-terminal subdomain.
Academic Article Electrostatic properties of protein-protein complexes.
Academic Article Comparative study of generalized born models: Born radii and peptide folding.
Academic Article Predicting 3D structures of transient protein-protein complexes by homology.
Academic Article PROTCOM: searchable database of protein complexes enhanced with domain-domain structures.
Academic Article Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives.
Academic Article Poisson-Boltzmann calculations of nonspecific salt effects on protein-protein binding free energies.
Academic Article Calculation of pKas in RNA: on the structural origins and functional roles of protonated nucleotides.
Academic Article Electrostatic control of the overall shape of calmodulin: numerical calculations.
Academic Article BANMOKI: a searchable database of homology-based 3D models and their electrostatic properties of five bacterial nucleoside monophosphate kinase families.
Academic Article Assessing the quality of the homology-modeled 3D structures from electrostatic standpoint: test on bacterial nucleoside monophosphate kinase families.
Academic Article Optimization of electrostatic interactions in protein-protein complexes.
Academic Article Predicting interacting and interfacial residues using continuous sequence segments.
Academic Article Protein-protein interactions.
Academic Article Approaches and resources for prediction of the effects of non-synonymous single nucleotide polymorphism on protein function and interactions.
Academic Article Protein structure analysis online.
Academic Article Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
Academic Article Electrostatic and lipid anchor contributions to the interaction of transducin with membranes: mechanistic implications for activation and translocation.
Academic Article Modeling effects of human single nucleotide polymorphisms on protein-protein interactions.
Academic Article On the electrostatic component of protein-protein binding free energy.
Academic Article Computational analysis of missense mutations causing Snyder-Robinson syndrome.
Academic Article On the pH-optimum of activity and stability of proteins.
Academic Article In silico modeling of pH-optimum of protein-protein binding.
Academic Article Structural assessment of the effects of amino acid substitutions on protein stability and protein protein interaction.
Academic Article On the role of electrostatics in protein-protein interactions.
Academic Article A missense mutation in CLIC2 associated with intellectual disability is predicted by in silico modeling to affect protein stability and dynamics.
Academic Article In silico and in vitro investigations of the mutability of disease-causing missense mutation sites in spermine synthase.
Academic Article Developing hybrid approaches to predict pKa values of ionizable groups.
Academic Article Progress in the prediction of pKa values in proteins.
Academic Article Analyzing effects of naturally occurring missense mutations.
Academic Article Predicting nonspecific ion binding using DelPhi.
Academic Article The role of protonation states in ligand-receptor recognition and binding.
Academic Article Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling.
Academic Article A rational free energy-based approach to understanding and targeting disease-causing missense mutations.
Academic Article Enhancing human spermine synthase activity by engineered mutations.
Academic Article Cancer missense mutations alter binding properties of proteins and their interaction networks.
Academic Article Molecular mechanisms of disease-causing missense mutations.
Academic Article Protonation and pK changes in protein-ligand binding.
Academic Article Understanding molecular effects of naturally occurring genetic differences.
Academic Article Structural and energetic determinants of tyrosylprotein sulfotransferase sulfation specificity.
Academic Article Computational and experimental approaches to reveal the effects of single nucleotide polymorphisms with respect to disease diagnostics.
Academic Article ProBLM web server: protein and membrane placement and orientation package.
Academic Article Rational design of small-molecule stabilizers of spermine synthase dimer by virtual screening and free energy-based approach.
Academic Article Chronic Beryllium Disease: revealing the role of beryllium ion and small peptides binding to HLA-DP2.
Academic Article Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins.
Academic Article On human disease-causing amino acid variants: statistical study of sequence and structural patterns.
Academic Article Structural, Dynamical, and Energetical Consequences of Rett Syndrome Mutation R133C in MeCP2.
Academic Article Predicting Binding Free Energy Change Caused by Point Mutations with Knowledge-Modified MM/PBSA Method.
Academic Article pKa predictions for proteins, RNAs, and DNAs with the Gaussian dielectric function using DelPhi pKa.
Academic Article Impact of Rett Syndrome Mutations on MeCP2 MBD Stability.
Academic Article Statistical investigation of surface bound ions and further development of BION server to include pH and salt dependence.
Academic Article Mutations in the KDM5C ARID Domain and Their Plausible Association with Syndromic Claes-Jensen-Type Disease.
Academic Article Investigating the linkage between disease-causing amino acid variants and their effect on protein stability and binding.
Academic Article Revealing the Effects of Missense Mutations Causing Snyder-Robinson Syndrome on the Stability and Dimerization of Spermine Synthase.
Academic Article Multiscale method for modeling binding phenomena involving large objects: application to kinesin motor domains motion along microtubules.
Academic Article SAAFEC: Predicting the Effect of Single Point Mutations on Protein Folding Free Energy Using a Knowledge-Modified MM/PBSA Approach.
Academic Article SAAMBE: Webserver to Predict the Charge of Binding Free Energy Caused by Amino Acids Mutations.
Academic Article Predicting the Impact of Missense Mutations on Protein-Protein Binding Affinity.
Academic Article Binding Analysis of Methyl-CpG Binding Domain of MeCP2 and Rett Syndrome Mutations.
Academic Article Cytoplasmic dynein binding, run length, and velocity are guided by long-range electrostatic interactions.
Academic Article Computational investigation of proton transfer, pKa shifts and pH-optimum of protein-DNA and protein-RNA complexes.
Academic Article Cofactors-loaded quaternary structure of lysine-specific demethylase 5C (KDM5C) protein: Computational model.
Academic Article DelPhiForce, a tool for electrostatic force calculations: Applications to macromolecular binding.
Academic Article Identification and characterization of a missense mutation in the O-linked ?-N-acetylglucosamine (O-GlcNAc) transferase gene that segregates with X-linked intellectual disability.
Academic Article Cytoskeletal-like Filaments of Ca2+-Calmodulin-Dependent Protein Kinase II Are Formed in a Regulated and Zn2+-Dependent Manner.
Academic Article Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations.
Academic Article DelPhiForce web server: electrostatic forces and energy calculations and visualization.
Academic Article Predicting protein-DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserver.
Academic Article Reproducing the Ensemble Average Polar Solvation Energy of a Protein from a Single Structure: Gaussian-Based Smooth Dielectric Function for Macromolecular Modeling.
Academic Article E-hooks provide guidance and a soft landing for the microtubule binding domain of dynein.
Academic Article DelPhiPKa: Including salt in the calculations and enabling polar residues to titrate.
Academic Article Structural Perspective on Revealing and Altering Molecular Functions of Genetic Variants Linked with Diseases.
Academic Article PKAD: a database of experimentally measured pKa values of ionizable groups in proteins.
Academic Article Processivity vs. Beating: Comparing Cytoplasmic and Axonemal Dynein Microtubule Binding Domain Association with Microtubule.
Academic Article Three additional patients with EED-associated overgrowth: potential mutation hotspots identified?
Academic Article A super-Gaussian Poisson-Boltzmann model for electrostatic free energy calculation: smooth dielectric distribution for protein cavities and in both water and vacuum states.
Academic Article Novel Genetic Markers for Early Detection of Elevated Breast Cancer Risk in Women.
Academic Article Modeling Electrostatic Force in Protein-Protein Recognition.
Academic Article SAAFEC-SEQ: A Sequence-Based Method for Predicting the Effect of Single Point Mutations on Protein Thermodynamic Stability.
Academic Article Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy.
Academic Article BION-2: Predicting Positions of Non-Specifically Bound Ions on Protein Surface by a Gaussian-Based Treatment of Electrostatics.
Academic Article Increased p53 signaling impairs neural differentiation in HUWE1-promoted intellectual disabilities.
Academic Article SAAMBE-3D: Predicting Effect of Mutations on Protein-Protein Interactions.
Academic Article SAAMBE-SEQ: a sequence-based method for predicting mutation effect on protein-protein binding affinity.
Concept Protein Interaction Maps
Concept Protein Unfolding
Concept Enhancer of Zeste Homolog 2 Protein
Concept Protein Domains
Academic Article SAMPDI-3D: predicting the effects of protein and DNA mutations on protein-DNA interactions.
Academic Article Computational Investigation of the pH Dependence of Stability of Melanosome Proteins: Implication for Melanosome formation and Disease.
Academic Article Protein-Protein Binding Free Energy Predictions with the MM/PBSA Approach Complemented with the Gaussian-Based Method for Entropy Estimation.
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